Iycee Charles de Gaulle Summary Presence Of Bacteria In The Stratosphere Biology Essay

Presence Of Bacteria In The Stratosphere Biology Essay

Recent surveies confirm that bacteriums exist in the stratosphere. It is by and large assumed that these bacteriums are go outing from Earth, although it is possible that some are incoming from infinite.

Most stratospheric bacterial isolates belong to the spore-forming genus Bacillus, although non-spore formers have besides been isolated. Theoretically, the smaller a bacteria is, the more likely it is to be carried from Earth to the stratosphere. Ultrasmall bacteriums have been often isolated from Earth environments, but non yet from the stratosphere. This is an anomalous state of affairs, since we would anticipate such little bacteriums to be over represented in the stratosphere-microflora. Here, we show that ultrasmall bacteriums are present in the environment on Earth ( i.e. , in saltwater and rainwater ) and discourse the paradox of why they have non been isolated from the stratosphere.Keywords: aerobiology, filterable bacteriums, ultrasmall bacteriums, symplasm, panspermia, rainwater bacteriums, stratospheric bug.

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Recent surveies have confirmed the original findings of Imshenetsky et al. , ( 1978 ) , that microorganisms ( bacteriums and Fungis ) exist in the stratosphere ( Wainwright et al. , 2003, 2004, Shivaji et al. , 2006, Griffin 2008, Yang et al. , 2008, Shivaji et al. , 2009, Smith et al. , 2010 ) .

Since a assortment of environmental-sampling techniques and attacks to microbiological sample-processing have been used in these assorted surveies we can be confident that the Earth ‘s biosphere does so widen into the stratosphere ( Wainwright, 2008 ) . While a diverse scope of bacteriums have been isolated from the stratosphere, spore organizing members of the genus Bacillus appear to be peculiarly common ( or else are selectively isolated from this part by the chosen isolation techniques ) .Now that that the being of a stratospheric bacterial has been established the following obvious inquiry is- from where make these organisms originate ; from Earth or from infinite? The application of Occam ‘s razor suggests that since these are bugs are normally found on Earth they must hold an Earth beginning.

There exists nevertheless, the possibility that some, at least, originate from infinite and that a assorted population of bacteriums exists in the stratosphere, some surpassing from Earth and some entrance from infinite ( Wainwright, 2003, Wainwright et Al. 2006 ) . How so might the micro-organisms, which originate on Earth, reach highs of 60 kilometers above the Earth ‘s surface? One possibility is that they are ejected into the stratosphere by vents. However, at least two of the above cited surveies ( Wainwright et al. , 2003, Shivaji et al.

, 2006 ) were conducted some two old ages after the last major volcanic eruption on Earth ; since bacteriums and fungi sedimentation under gravitation, any stratosphere isolations of beings, derived from this survey are improbable to hold originated from vents. A figure of other mechanisms have been suggested by which bacterium might be carried into the stratosphere, including bluish lightening, gravitophotophoresis and electrostatic action ( Wainwright et al. , 2006, Dehl et al. , 2008 ) . However, it appears improbable that any of these mechanisms would be capable of transporting a atom of a diameter transcending 1Aµm, i.e. the usual size of bacteriums when grown on nutrient-rich research lab media ( Dehl et al.

, 2008 ) . The likeliness of atoms like bacteriums being elevated from Earth to the stratosphere is nevertheless, probably to increase with diminishing cell size. Very little bacteriums do happen in nature ( Hahn, 2004 ) and it is likely that these alleged “ ultrabacteria ” , or “ ultrasmall bacterium ” ( i.

e. filterable bacterium ) would be more readily easy carried to the stratosphere than bacteriums of a larger size. As a consequence, most of the bacterium which are readily isolated from the stratosphere should be ultrasmall signifiers. As this is non the instance, so either some mechanism must be by which larger bacteriums are carried to the stratosphere or else, the non-ultrasmall bacterium found in this part must hold originated from infinite.The purpose of this survey was to find if ultrasmall bacteriums occur in Earth environments, such as dirts, saltwater and rainwater and effort to explicate the paradox of why they have non been isolated from the stratosphere.

Material and methods

Sampling of dirts and saltwater

Seawater samples were obtained from the North Sea ; the English Channel ; the East Pacific Ocean ; the Mediterranean Sea ; the Atlantic Ocean, the Red Sea and the Black Sea, and the Indian Ocean. The undermentioned dirt samples were obtained from the UK ( Sheffield part ) : deciduous forest ( under Acer psuedoplatanus and Fagus silvaticus ) ; cone-bearing forest dirt ( Pinus species ) agricultural ; loam ( last harvest wheat ) and an agricultural grassland dirt.

Fig. 1. The filter setup. The saltwater sample, or dirt suspension, is transferred to the top chamber and is allowed to go through, under gravitation, through the micropore membrane between the two Chamberss into the lower chamber which contain the liquid bacteria-isolation medium.Seawater samples and dirt suspension ( 1g. soil-100ml of sterile, distilled H2O ) were filtered through a micropore filter setup ( Fig.1 ) , holding either a 0.

2 or 0.1 Aµm, micropore filter setup ( Millipore Express Plus ) ; the setup consists of two Chamberss with a membrane filter between ; the saltwater sample ( 100ml ) or dirt suspension ( 1g. soil:100ml de sterile, deionized H2O ) was transferred to the top chamber and allowed to go through, under gravitation ( i.

e. without suction ) , into the lower chamber incorporating the liquid bacterial isolation medium. The filter setup was so incubated at 250C for 2 hebdomads and checked at intervals for marks of clouding of the medium, i.e. bacterial growing. The undermentioned media were used: 1 ) LB stock ; 2 ) food stock ; 3 ) LB and alimentary stock made up in autoclaved ( 1200C for 20mins ) saltwater ( for usage with saltwater samples merely ) and 4 ) LB and alimentary stock diluted 100 crease with distilled H2O ( oligotrophic, i.e. low food, media ) .

All media were autoclaved at 1200 C for 20 mins.

Checks for unity of filter membrane

The unity of the micropore filter was checked as follows. When a bacteria passed through one of the micropore filter membranes ( with the consequence that the medium belong tuned cloudy ) the top portion of the filter setup was removed and a new one containing fresh medium ( Nutrient Broth ) was screwed into the upper chamber which contains the filter. A civilization of Staphylococcus aureus, grown on Nutrient agar ) was so allowed to go through through the filter, under gravitation into the medium ( Nutrient Broth ) below. If no growing of this bacteria occurred ( which was ever the instance ) , it was taken that the membrane did non let through “ normal ” sized bacteriums ( i.

e. transcending 1Aµm ) and that, as a consequence, merely ultrasmall species ( i.e. , filterable signifiers ) had been isolated.

Selective isolation of Bacillus species

For the selective of members of the genus Bacillus, the saltwater and dirt suspensions were heated to 800C for 5 mins. a temperature which kills none-spore formers and thereby selectively isolates spore forming bacteriums, i.e. chiefly Bacillus species ( Travers et al.

, 1987 ) .

Sampling of rainwater

Samples of rain H2O were collected in unfastened, sterilised containers from the roof of Firth Court, University of Sheffield during December ; 2009. Cell masses present in this rainwater were studied utilizing light microscopy every bit good as environmental scanning negatron microscopy ( the latter at the University of Manchester ) . Symplasm was besides stained with the Deoxyribonucleic acid discoloration Sybr Green ( which stains fluorescent viridity in the presence of DNA ) and examined utilizing a fluorescent microscope. Rain samples were besides was passed through 0.2Aµm filters as described above for saltwater.

Consequences and Discussion

Evidence for the happening of ultrasmall bacteriums in saltwater

Bacteria capable of go throughing through 0.

2 Aµm filters were isolated from all of the saltwater samples. No such filterable bacteriums were nevertheless, isolated from the broad scope of dirt samples tested. These findings agree with old studies on the widespread happening 0.2Aµm- filterable bacteriums in saltwater from around the universe. Other workers have nevertheless, reported the isolation of 0.

2 Aµm filterable bacteriums from fresh waters and dirts, a determination which we have been unable to retroflex. Merely one of these saltwater isolates was identified in this research lab ( utilizing 16srRNA analysis ) ; this was a species of Rhienimuria isolated from the North Sea sample.

Attempts to selectively insulate Bacillus spp. and oligotrophic members of this genus

Since Bacillus sp. are the most often reported bacteriums found in the stratosphere efforts were made to selectively insulate ultrasmall signifiers of members of this genus from the environmental samples used. It has been reported that the size of research lab grown bacterial isolates lessenings when grown in a alimentary hapless ( oligotrophic ) , medium ; therefore it may be possible to do “ normal sized “ bacteriums filterable simply by turning them in an oligotrophic medium ( such as the 100 crease diluted medium used here ) .

No filterable Bacilli were nevertheless, isolated from any of the environmental samples used here, and the research lab strains of Bacillus species ( B.sphaericus, B. simplex and B. putilus ) were non converted to filterable signifiers when grown on low-nutrient medium.

Evidence for the presence of ultrasmall bacteriums from rainwater

Ultrasmall bacteriums were seen utilizing the light microscope ( X100 oil submergence ) in samples of Sheffield rainwater happening in little multitudes consisting a assortment of different morphologies and sizes ; these multitudes are referred here as ” symplasm ” . This term was used in the early microbiology literature to mention to formless mass of bacteriums observed in dirts ; here, the term is re-introduced to mention to cell-masses seen in rainwater. Fig.

2 shows a typical rainwater-derived symplasm mass as seen under the light microscope ( X100, oil ) . A mass of cells of different sizes is seen held together in an formless mass-the symplasm.Fig.2 a ) visible radiation microscope image of symplasm from rainwater ; B ) fluorescent ( green ) microscope image of symplasm as observed after Syber Green II staining.The obvious inquiry that following arises is- are these symplasm multitudes biological in nature, or merely inorganic atoms? To reply this inquiry, the symplasm was stained utilizing Syber Green II discoloration.

This is a fluorescent nucleic acid discoloration which fluoresces viridity in the presence of DNA and RNA ( Fig. 1b ) , thereby demoing that the atom mass is made of biological entities. This was further confirmed utilizing the environmental scanning negatron microscope ( at Manchester University ) was following used to see the symplasm. The environmental SEM allows biological stuff to be viewed without pre-coating the sample with metals such as gold.As can be seen in Fig 3 ( a ) subum atoms were seen, some of which are in the part about 0.1 Aµm ( note that, compared to the light microscope, a better size finding can be achieved by the usage of this microscope ) .

Fig.3. ( a ) symplasm viewed under environmental SEM, ( B ) a hole in one of the symplasm constituents created by long term exposure to the negatron beam of the scanning negatron microscope, thereby demoing that the constructions seen are non inorganic atoms.Next, a technique was developed to show that the single symplasm characteristics observed in rain are biological in nature and non simply inorganic atoms ( i.e. , dust ) . In order to accomplish this distinction, samples of rainwater incorporating symplasm were exposed to a longer than normal period of exposure of the negatron beam. Biological atoms, unlike inorganic signifiers are likely to be affected by such exposure.

Figure 3 ( B ) shows that this is the instance, and that the symplasm cells are holed by long-run exposure to the negatron beam. This method backs up the Sybr Green II nucleic acid staining attack used here, confirms the fact that symplasm cells are biological. It is besides included here in order to foreground a technique which can be used, when surveies are restricted to the usage of the environmental scanning negatron microscope for distinguishing between biological and inorganic samples in any environmental sample collected on Earth, or elsewhere.A broad scope of bacteriums were isolated from the symplasm multitudes ( utilizing LB and Nutrient media ) , demoing that they are non made up of individual species, but are a complex mixture of different bacteriums and perchance other micro-organisms. No ultrasmall bacteriums were nevertheless isolated when rainwater incorporating symplasm multitudes were passed ( without suction ) through a 0.2Aµm membranes, demoing that the single ultrasmall bacterial seen utilizing microscope techniques are steadfastly bound with in the syplasm multitudes, which are excessively big to go through through the filters.

Discussion of these findings in relation to the microbiology of the stratosphere

As was mentioned in the Introduction, a figure of recent surveies have confirmed that micro-organism, both bacteriums and Fungis, can be isolated from the stratosphere at highs of up to 60km, with the bulk of surveies being conducted at 41km.

The scope of environmental and laboratory-based sampling techniques used in these surveies would look to except the possibility that these stratosphere isolates are all contaminations ; we can safely reason therefore that both bacteriums and Fungis do happen in the stratosphere. Assuming that some, at least, of these stratosphere beings originate from Earth we need to explicate how they can make these utmost highs. Although the exact mechanisms of such transportation are unknown, it is likely that the smaller the feasible microbic unit involved the more opportunity it would hold of being carried to the stratosphere. The fact that ultrasmall bacteriums exist on Earth hence evidently increases the opportunities of micro-organisms being elevated from the surface of the planet to the stratosphere.

There is nevertheless, one paradox which needs to be addressed in relation to this possibility- viz. that the ultrasmall bacterium which have been isolated and characterised belong to the Bacteriodes, Alphaproteobacteria, Betaproteobacteria, Actinobacteria and Spirochaetes ( Hahn, 2004 ) , Spirillum, Leucothrix, Flavobacterium, Cytophaga, Vibrio ( Anderson and Heffernan,1965 ) and, to day of the month, none of these bacteriums have been isolated from the stratosphere ; the stray bacterial population of this part being dominated by species of Bacillus. As a consequence, if the bacterial vegetation of the stratosphere consequences from ultrasmall bacteriums is transferred from the Earth ‘s oceans to the stratosphere one would anticipate that the stratosphere microflora would incorporate, if non be dominated by, species of ultrasmall bacteriums which are normally found on Earth.

This determination might propose that extremist little bacteriums are non carried up into the stratosphere and that the bacteriums, such as species of Bacillus normally isolated from this part are in fact incoming from infinite. Alternatively, the presence of Bacillus species in the stratosphere could follow from a decrease in cell size following famishment in Earth environments which would cut down their size and do them conformable to the mechanisms ( known or unknown ) which might be capable of reassigning bacteriums from Earth to highs of 41km and above ( our consequences show nevertheless, that this is improbable in the instance of Bacillus species ) . Differential endurance, and or, isolation of Bacillus sp. , and the other bacterium found in the stratosphere may offer an alternate account.

A assorted population of ultrasmall bacteriums may be lifted into the stratosphere but merely a few ( chiefly spore-forming Bacilli ) might last in this part, or be readily cultured when stratosphere-derived samples are returned to the research lab. However, non-spore forming bacteriums, such as species of Staphylococcus and Micrococcus and Mycobacterium, have been isolated from the stratosphere ( Wainwright et al. , 2003, Imshenetsky et al. , 1978 ) , so bacteria other than spore formers can clearly last in this part, as can be seen from the undermentioned list of bacteriums which have been isolates from the stratosphere to day of the month ( Table1 ) .

Table 1. Bacterias isolated from the stratosphere

40km and above


Bacillus isronensis, Bacillus aryabhattai, Bacillus simples Bacillus aerius, Bacillus aerophilus, Bacillus stratosphericus, Bacillus altitudinis, Bacillus pumilusMicrococccus albus, Mycobacterium luteum, Janibacter hoylei ( Actinomycete ) , Staphylocccus pastueriBacillus subtilis, Bacillus endophyticus,Brevibacterium ( Actinomycete ) Spp. , Microbacteria Spp. , Staphylococcus Spp.None spore forming species are given in boldWe were unable to a ) selectively isolate filterable ( 0.

2 Aµm ) Bacillus species from any of our environmental samples and B ) convert Bacillus species from normal research lab sized bacteriums to filterable bacteriums by the infliction of a period of growing on an oligotrophic medium. However, Miteva and Brenchley ( 2005 ) , reported the isolation ( from 120,000 twelvemonth old Greenland Glacier ice nucleus ) of several species of Bacillus isolates ( described as being clearly related to Bacillus mucilaginosus ) possessing little filterable cells and spores.The symplasm masses observed here could hold been formed a ) on Earth, or at low height, or B ) at high height in the stratosphere.

In the first instance, the comparatively big multitudes formed are improbable to be carried into the stratosphere. In the latter instance nevertheless, single, ultrasmall bacteriums might be more readily transferred from Earth to the stratosphere, where they coalesce to organize symplasm multitudes which so deposit readily to Earth. In this manner one can imagine a rhythm whereby single ultrasmall bacteriums are carried from Earth into the stratosphere and later deposited to Earth after organizing into high denseness symplasm multitudes. These multitudes could so interrupt up ( and reproduce ) in Earth environments and so be returned to the stratosphere.

Such a rhythm could supply a mechanism for exposing bacteriums to the mutagenic effects of the high degrees of UV radiation found in the stratosphere and thereby heighten the rate of bacterial development of Earth- bacteriums. It could besides supply a agency by which bacteriums are carried across the Earth, a likeliness which would be peculiarly of import should any of these symplasm-related ultrasmall bacteriums are works, animate being or human pathogens.The absence in the stratosphere of ultrasmall bacteriums normally found in the oceans of the universe suggests that such environments do non supply the chief beginning of bacteriums to the stratosphere. It should be borne in head that Wainwright et Al. ( 2006 ) provided grounds in support of the position that the stratosphere contains a assorted population of bacteriums comprised of those coming in from infinite ( panspermia ) and those go outing from Earth ( negative panspermia ) .

The undermentioned points sum up our treatment:By the known mechanisms, it is likely that the smaller the atom is, the more likely it is to be transferred from Erath to the stratosphere.This suggests that stratospheric micro-organisms should be preponderantly species of ultrasmall bacteriums which occur on Earth.However, the bacterium which have, to day of the month, been isolated from the stratosphere are members of bacterial genera non typically isolated from Earth environments after filtration, i.e. notably species of Bacillus.

The bacterial growing media used in this survey was capable of insulating ultrasmall bacteriums from stratospheric samples, if they are present in the stratosphere-the fact that they are non, suggests that stable, ultrasmall bacteriums are non present in the stratosphere, even though such little bacteriums should be more readily carried from Earth to the stratosphere than are bacteriums of size larger than 1micron.The most likely account for the happening of non-filterable, “ big ” bacteriums, indistinguishable to those found on Earth, is that little, famishment signifiers are carried, by some mechanism to the stratosphere.Why representatives of the stable, ultrasmall bacteriums, found in the Earth ‘s oceans are non over-represented amongst stratosphere isolates remains an mystery. It could be argued that such bacteriums can non defy the utmost environmental conditions found in the stratosphere, as can for illustration resilient, spore-forming Bacilli. However, non-spore organizing “ big ” , bacteriums have besides been isolated from this part.

Ultrasmall Bacilli have been found in 1200 twelvemonth ice nucleuss in Greenland, so ancient ice may supply a beginning of those Bacilli which have been isolated from the stratosphere.